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Used Gene Dolls software
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Used Gene Dolls

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Added: January 25, 2010 | Visits: 796

GENE Graph Export Engine GENE Graph Export Engine is an advanced XML exporter. GENE Graph Export Engine is a complex convertor/framework for multi-namespace XML transforming and exporting. It is able to convert various XML types including SVG, DocBook, MathML, XSL-FO, and their combinations into a wide area of output...



Platforms: *nix

License: Freeware Size: 1.1 MB Download (76): GENE Graph Export Engine Download

Released: September 11, 2012  |  Added: September 11, 2012 | Visits: 312

Disease Gene Profiler Disease Gene Profiler (DGP) comprises of a set of (bioinformatics) tools that can be used to identify the genes underlying susceptibility to common multifactorial diseases (such as diabetes, asthma and cancer) using freely available datasources.





Platforms: Windows, Mac, Linux

License: Freeware Size: 113.65 KB Download (28): Disease Gene Profiler Download

Added: May 09, 2010 | Visits: 725

Bio::SAGE::Comparison Bio::SAGE::Comparison module compares data from serial analysis of gene expression (SAGE) libraries. SYNOPSIS use Bio::SAGE::Comparison; $sage = Bio::SAGE::Comparison->new(); This module provides several tools for comparing data generated from serial analysis of gene expression (SAGE)...


Platforms: *nix

License: Freeware Size: 8.19 KB Download (86): Bio::SAGE::Comparison Download

Added: June 16, 2010 | Visits: 708

Bio::SAGE::DataProcessing Bio::SAGE::DataProcessing module processes raw serial analysis of gene expression (SAGE) data. SYNOPSIS use Bio::SAGE::DataProcessing; $sage = Bio::SAGE::DataProcessing->new(); # open sequence and quality files open( READS, "library.fasta" ); open( QUAL, "library.qual.fasta" ); #...


Platforms: *nix

License: Freeware Size: 19.46 KB Download (76): Bio::SAGE::DataProcessing Download

Released: October 24, 2012  |  Added: October 24, 2012 | Visits: 360

Gene Visualizer Gene Visualizer is a small app designed to display an organism's genes visually. The program takes two sets of genes as input. One is a list of an organism's predicted genes, and the other is a list of an organism's known genes. It can be useful to compare how the two lists of genes match up,...


Platforms: Windows

License: Freeware Download (49): Gene Visualizer Download

Released: June 16, 2012  |  Added: June 16, 2012 | Visits: 285

Wormbase Converter Wormbase Converter is a simple, easy to use application designed to help you with the conversion of any Gene ID into any other Gene ID. You can convert a "WormBase ID", a "Gene/Transcript/CDS Sequence Name" or a "Gene Name" into a "WormBase ID", a "Gene Sequence Name" or a "Gene Name". Moreover,...


Platforms: Windows

License: Freeware Download (45): Wormbase Converter Download

Released: June 16, 2012  |  Added: June 16, 2012 | Visits: 246

Sylamer Sylamer was designed as a Java-based tool for finding significantly over or under-represented words in sequences according to a sorted gene list. Typically it is used to find significant enrichment or depletion of microRNA or siRNA seed sequences from microarray expression data. Sylamer is...


Platforms: Windows

License: Freeware Download (48): Sylamer Download

Released: October 06, 2012  |  Added: October 06, 2012 | Visits: 281

Reborn Dolls Beautiful images of reborn dolls come alive on your screen


Platforms: Windows, Unix

License: Freeware Size: 4.27 MB Download (28): Reborn Dolls Download

Released: October 10, 2012  |  Added: October 10, 2012 | Visits: 152

AnnaF AnnaF is an automatic gene annotation framework, that is used to do some automatic annotation for C. higginsianum. It was also tested on F. graminearum and should work well for fungi in general. AnnaF was build upon the pipeline framework Anna.


Platforms: Windows, Mac, Linux

License: Freeware Size: 643.04 KB Download (27): AnnaF Download

Released: July 26, 2012  |  Added: July 26, 2012 | Visits: 264

Gene-Environment iNteraction Simulator 2 Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of...


Platforms: Windows, Mac, Linux

License: Freeware Size: 60.89 MB Download (28): Gene-Environment iNteraction Simulator 2 Download

Released: December 21, 2012  |  Added: December 21, 2012 | Visits: 311

Maple Tree Maple Tree is a Java based visualization tool used by researchers in the biological sciences to visualize and graphically browse the results of analyses of gene expression data collected from microarray experiments.


Platforms: Windows, Mac, Linux

License: Freeware Size: 1.17 MB Download (28): Maple Tree Download

Released: July 04, 2012  |  Added: July 04, 2012 | Visits: 242

PASA The Program to Assemble Spliced Alignments (PASA) is used to automatically incorporate ESTs and full-length cDNAs into gene structure annotations, in the process annotating UTRs, alternative splicing variations, and polyadenylation sites.


Platforms: Mac, BSD, Linux

License: Freeware Size: 89.51 MB Download (27): PASA Download

Released: December 20, 2012  |  Added: December 20, 2012 | Visits: 180

RssGsc RssGsc (Rank Sum Statistics for Gene Set Collections) is a bioinformatics tool used to find meaningful gene sets using a ranked list of genes (obtained form an experiment).


Platforms: Windows, Mac, Linux

License: Freeware Size: 14.85 MB Download (28): RssGsc Download

Added: May 10, 2013 | Visits: 308

Perl Entrez Gene Parser This program is a parser that abstract a data structure from a given Entrez Gene record, and users of the parser can decide what to do/extract from the data structure. Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent,...


Platforms: Windows, Mac, *nix, Perl, BSD Solaris

License: Freeware Download (31): Perl Entrez Gene Parser Download

Added: June 28, 2013 | Visits: 246

Gene Expression Colormap a simple function that returns a colormap, C, for visualizing gene expression. C is just a N x 3 matrix [R G B] describing the range of color values.example usage: C = exp_colormap('blue-yellow',64); colormap(C);called without any arguments, it returns a [3 x 64] green-red colormap.options for...


Platforms: Matlab

License: Freeware Size: 10 KB Download (18): Gene Expression Colormap Download

Added: September 17, 2013 | Visits: 379

Add Gene Names to Marker Map This script uses the gene name field(s) in a table downloaded from the UCSC Genome Browser to add gene names to an existing SVS marker map saved in the DSM file format. Note: Though the following instructions specify downloading a table containing genes based on the Mar. 2006 (NCBI36/hg18) Human...


Platforms: Mac

License: Freeware Size: 10.24 KB Download (17): Add Gene Names to Marker Map Download

Released: December 06, 2013  |  Added: December 06, 2013 | Visits: 51

Lalaloopsy Animated Puzzles Lalaloopsy were once rag dolls who magically came to life when their very last stitch was sewn. Each doll has their own personality that comes from the fabrics used to make them. Now Lalaloopsy are avialable in fun 3-D puzzles for the iPad, with Easy, Medium and Hard levels of difficulty....


Platforms: iOS

License: Shareware Cost: $0.99 USD Size: 480 MB Download (7): Lalaloopsy Animated Puzzles Download

Released: January 02, 2014  |  Added: January 02, 2014 | Visits: 124

Lalaloopsy Animated Puzzles for iPhone Lalaloopsy were once rag dolls who magically came to life when their very last stitch was sewn. Each doll has their own personality that comes from the fabrics used to make them. Now Lalaloopsy are avialable in fun 3-D puzzles for the iPhone, with Easy, Medium and Hard levels of difficulty....


Platforms: iOS

License: Shareware Cost: $0.99 USD Size: 239 MB Download (7): Lalaloopsy Animated Puzzles for iPhone Download

Released: January 02, 2014  |  Added: January 02, 2014 | Visits: 84

Lalaloopsy Puzzles for iPhone Lalaloopsy were once rag dolls who magically came to life when their very last stitch was sewn. Each doll has their own personality that comes from the fabrics used to make them. Now Lalaloopsy are avialable in fun puzzles for the iPhone, with Easy, Medium and Hard levels of difficulty....


Platforms: iOS

License: Shareware Cost: $0.99 USD Size: 71 MB Download (7): Lalaloopsy Puzzles for iPhone Download

Added: October 05, 2006 | Visits: 4.012

Folder Cache Folder Cache lists the recently used folders in your computer's open/save dialog windows. This program is for people who actively use computers and who often work with a large number of folders and documents. Each day most people use the same files and folders over and over again. Thousands...


Platforms: Windows

License: Shareware Cost: $19.00 USD Size: 544 KB Download (149): Folder Cache Download

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